Education History

  • Ph.D., Computer Science, Texas A&M University

Work Experience

Senior Professional Staff, JHU Applied Physics Laboratory

Publications

Akusobi C, Choudhery S, Benghomari BS, Wolf ID, Singhvi S, Ioerger TR, Rubin EJ. 2025. Transposonsequencing
across multiple Mycobacterium abscessus isolates reveals significant functional genomic
diversity among strains. mBio 16:e03376-24.

Choudhery S, DeJesus MA, Srinivasan A, Rock J, Schnappinger D, et al. (2024) A dose-response model for
statistical analysis of chemical genetic interactions in CRISPRi screens. PLOS Computational Biology 20(5):
e1011408.

Choudhery S and Ioerger R. 2023. Dual ICA to extract interacting sets of genes and conditions from
transcriptomic data. In Proceedings of the 14th ACM International Conference on Bioinformatics,
Computational Biology, and Health Informatics (BCB ’23). Association for Computing Machinery, New York,
NY, USA, Article 8, 1–13.

Choudhery, S., A. J. Brown, C. Akusobi, E. J. Rubin, C. M. Sassetti and T. R. Ioerger (2021). “Modeling sitespecific
nucleotide biases affecting himar1 transposon insertion frequencies in tnseq data sets.” Msystems
6(5): e00876-00821.

Choudhery, S., C. Huang and D. Wang (2018). “T253. A Machine Learning Approach to Predict the Changes
of Brain Functional Connectivity in Autism Spectrum Disorder From the Gene Expression Data.” Biological
Psychiatry 83(9): S227-S228.

Fuchs, T., R. Benedict, S. Choudhery, X. Li, K. Carolus, M. Mallory, A. Bartnik, D. Oship, F. Yasin and D.
Ramasamy (2018). Preservation of Functional Connectivity Moderates the Impact of White Matter Tract
Disruption on Cognition in Multiple Sclerosis (S44. 008), Wolters Kluwer Health, Inc. on behalf of the American
Academy of Neurology.

Fuchs, T., K. Carolus, S. Choudhery, D. Jakimovski, N. Bergsland, B. Weinstock-Guttman, R. Zivadinov, R.
Benedict and M. Dwyer (2017). Whole brain tract disruption better explains cognitive decline in multiple
sclerosis than total lesion volume. MULTIPLE SCLEROSIS JOURNAL, SAGE PUBLICATIONS LTD 1
OLIVERS YARD, 55 CITY ROAD, LONDON EC1Y 1SP, ENGLAND.

Fuchs, T., M. Dwyer, A. Kuceyeski, S. Choudhery, K. Carolus, X. Li, B. Weinstock-Guttman, D. Jakimovski, D.
Ramasamy and R. Zivadinov (2019). “2.2 Brain Connectome and Reduced Conscientiousness.”
Conscientiousness, Cognitive Reserve, and the Human Brain Connectome in Multiple Sclerosis: 76.
Fuchs, T., M. Dwyer, S. Roy, S. Choudhery, P. Rooney, K. Carolus, N. Bergsland, D. Ramasamy, D. Jakimovski
and B. Weinstock-Guttman (2017). Associations between low conscientiousness and cognitive impairment in
MS may be due to shared pathophysiology: structural network disruption of frontal cortex regions. MULTIPLE
SCLEROSIS JOURNAL, SAGE PUBLICATIONS LTD 1 OLIVERS YARD, 55 CITY ROAD, LONDON EC1Y
1SP, ENGLAND.

Fuchs, T., M. G. Dwyer, S. Roy, S. Choudhery, P. Rooney, K. Carolus, N. Bergsland, D. Ramasamy, D.
Jakimovski and B. Weinstock-Guttman (2017). Elucidating the Pathophysiology of Conscientiousness in
Multiple Sclerosis: Structural Network Disruption of Frontal Cortex Regions. MULTIPLE SCLEROSIS
JOURNAL, SAGE PUBLICATIONS LTD 1 OLIVERS YARD, 55 CITY ROAD, LONDON EC1Y 1SP,
ENGLAND.

Fuchs, T., C. Vaughn, S. Choudhery, K. Carolus, D. Jakimovski, N. Bergsland, B. Weinstock-Guttman, R.
Benedict, R. Zivadinov and M. Dwyer (2017). Lesion-based disruption of connections between the amygdala
and surrounding ipsilateral structures may be protective against fatigue in multiple sclerosis. MULTIPLE
SCLEROSIS JOURNAL, SAGE PUBLICATIONS LTD 1 OLIVERS YARD, 55 CITY ROAD, LONDON EC1Y
1SP, ENGLAND.

Fuchs, T. A., R. H. Benedict, A. Bartnik, S. Choudhery, X. Li, M. Mallory, D. Oship, F. Yasin, K. Ashton and D.
Jakimovski (2019). “3.2 Brain Connectome and Cognitive Reserve.” Conscientiousness, Cognitive Reserve,
and the Human Brain Connectome in Multiple Sclerosis: 133.

Fuchs, T. A., R. H. Benedict, A. Bartnik, S. Choudhery, X. Li, M. Mallory, D. Oship, F. Yasin, K. Ashton and D.
Jakimovski (2019). “Preserved network functional connectivity underlies cognitive reserve in multiple
sclerosis.” Human Brain Mapping 40(18): 5231-5241.

Fuchs, T. A., M. G. Dwyer, A. Kuceyeski, S. Choudhery, K. Carolus, X. Li, M. Mallory, B. Weinstock‐Guttman,
D. Jakimovski and D. Ramasamy (2018). “White matter tract network disruption explains reduced
conscientiousness in multiple sclerosis.” Human Brain Mapping 39(9): 3682-3690.

Fuchs, T. A., C. B. Vaughn, R. H. Benedict, B. Weinstock-Guttman, S. Choudhery, K. Carolus, P. Rooney, K.
Ashton, D. P. Ramasamy and D. Jakimovski (2019). “Lower self-report fatigue in multiple sclerosis is
associated with localized white matter tract disruption between amygdala, temporal pole, insula, and other
connected structures.” Multiple sclerosis and related disorders 27: 298-304.

Honors and Awards

  • Department of Computer Science and Engineering Travel Award, Texas A&M University (2023)
  • Buck Weirus Spirit Award, Texas A&M University (2023)
  • Department of Computer Science and Engineering Travel Award, Texas A&M University (2022)
  • Graduate Community Impact Award, Texas A&M University (2022)
  • College of Engineering Fellowship, Texas A&M University (2019)
  • Gina Hammond Computer Science Award, University at Buffalo (2015)